近期论文

B. P. Anton, S. Kasif, R. J. Roberts, M. Steffen, “Objective: Biochemical Function.” Frontiers in Genetics 5 (2014). Link
B. P. Anton, Y.-C. Chang, P. Brown, H.-P. Choi, L. L. Faller, J. Guleria, Z. Hu, N. Klitgord, A. Levy-Moonshine, A. Maksad, V. Mazumdar, M. McGettrick, L. Osmani, R. Pokrzywa, J. Rachlin, R. Swaminathan, B. Allen, G. Housman, C. Monahan, K. Rochussen, K. Tao, A. Bhagwat, S. Brenner, L. Columbus, V. d. Crécy-Lagard, D. Ferguson, A. Fomenkov, G. Gadda, R. D. Morgan, A. L. Osterman, D. A. Rodionov, I. A. Rodionova, K. E. Rudd, D. Söll, J. Spain, S.-y. Xu, A. Bateman, R. M. Blumenthal, J. M. Bollinger, W.-S. Chang, M. Ferrer, I. Friedberg, M. Galperin, J. Gobeill, D. Haft, J. Hunt, P. Karp, W. Klimke, C. Krebs, D. Macelis, R. Madupu, M. J. Martin, J. H. Miller, C. O’Donovan, B. Palssøn, P. Ruch, A. Setterdahl, G. Sutton, J. Tate, A. Yakunin, D. Tchigvintsev, R. Greiner, D. Horn, K. Sjölander, S. L. Salzberg, D. Vitkup, S. Letovsky, D. Segrè, C. DeLisi, R. J. Roberts, M. Steffen, S. Kasif, “The COMBREX Project: Design, Methodology, and Initial Results.” PLOS Biology 11(8):e1001638. (2013). Link
H. P. Choi, S. Juarez, S. Ciordia, M. Fernandez, R. Bargiela, J. P. Albar, V. Mazumdar, B. P. Anton, S. Kasif, M. Ferrer, M. Steffen, “Biochemical Characterization of Hypothetical Proteins from.” PLoS One 8, e66605 (2013). PubMed
M. Natarajan, G. M. Schiralli Lester, C. Lee, A. Missra, G. A. Wasserman, M. Steffen, D. S. Gilmour, A. J. Henderson, “NELF coordinates RNA polymerase II pausing, premature termination and chromatin remodeling to regulate HIV transcription.” J Biol Chem (2013). PubMed
J. Flanigon, M. Kamali-Moghaddam, I. Burbulis, C. Annink, M. Steffen, P. Oeth, R. Brent, D. van den Boom, U. Landegren, C. Cantor, “Multiplex protein detection with DNA readout via mass spectrometry.” N Biotechnol 30, 153-8 (2013). PubMed
D. E. Wood, H. Lin, A. Levy-Moonshine, R. Swaminathan, Y. C. Chang, B. P. Anton, L. Osmani, M. Steffen, S. Kasif, S. L. Salzberg, “Thousands of missed genes found in bacterial genomes and their analysis with COMBREX.” Biol Direct 7, 37 (2012). PubMed
R. J. Roberts, Y. C. Chang, Z. Hu, J. N. Rachlin, B. P. Anton, R. M. Pokrzywa, H. P. Choi, L. L. Faller, J. Guleria, G. Housman, N. Klitgord, V. Mazumdar, M. G. McGettrick, L. Osmani, R. Swaminathan, K. R. Tao, S. Letovsky, D. Vitkup, D. Segre, S. L. Salzberg, C. Delisi, M. Steffen, S. Kasif, “COMBREX: a project to accelerate the functional annotation of prokaryotic genomes.” Nucleic Acids Res 39, D11-4 (2011). PubMed
A. Bergerat, J. Decano, C. J. Wu, H. Choi, A. I. Nesvizhskii, A. M. Moran, N. Ruiz-Opazo, M. Steffen, V. L. Herrera, “Prestroke proteomic changes in cerebral microvessels in stroke-prone, transgenic[hCETP]-Hyperlipidemic, Dahl salt-sensitive hypertensive rats.” Mol Med 17, 588-98 (2011). PubMed
G. G. Bushkin, D. M. Ratner, J. Cui, S. Banerjee, M. T. Duraisingh, C. V. Jennings, J. D. Dvorin, M. J. Gubbels, S. D. Robertson, M. Steffen, B. R. O’Keefe, P. W. Robbins, J. Samuelson, “Suggestive evidence for Darwinian Selection against asparagine-linked glycans of Plasmodium falciparum and Toxoplasma gondii.” Eukaryot Cell 9, 228-41 (2010). PubMed
A. Carpentieri, D. M. Ratner, S. K. Ghosh, S. Banerjee, G. G. Bushkin, J. Cui, M. Lubrano, M. Steffen, C. E. Costello, B. O’Keefe, P. W. Robbins, J. Samuelson, “The antiretroviral lectin cyanovirin-N targets well-known and novel targets on the surface of Entamoeba histolytica trophozoites.” Eukaryot Cell 9, 1661-8 (2010). PubMed
A. Chatterjee, S. Banerjee, M. Steffen, R. M. O’Connor, H. D. Ward, P. W. Robbins, J. Samuelson, “Evidence for mucin-like glycoproteins that tether sporozoites of Cryptosporidium parvum to the inner surface of the oocyst wall.” Eukaryot Cell 9, 84-96 (2010). PubMed
S. Kasif, M. Steffen, “Biochemical networks: the evolution of gene annotation.” Nat Chem Biol 6, 4-5 (2010). PubMed
V. L. Herrera, J. L. Decano, M. Steffen, N. Ruiz-Opazo, “Autophagy: insights from DEspR-deficiency and haploinsufficiency.” Autophagy 5, 259-62 (2009). PubMed
K. Steiling, A. Y. Kadar, A. Bergerat, J. Flanigon, S. Sridhar, V. Shah, Q. R. Ahmad, J. S. Brody, M. E. Lenburg, M. Steffen, A. Spira, “Comparison of proteomic and transcriptomic profiles in the bronchial airway epithelium of current and never smokers.” PLoS ONE 4, e5043 (2009). PubMed
C. J. Wu, T. Cai, K. Rikova, D. Merberg, S. Kasif, M. Steffen, “A predictive phosphorylation signature of lung cancer.” PLoS One 4, e7994 (2009). PubMed
A. Saharia, L. Guittat, S. Crocker, A. Lim, M. Steffen, S. Kulkarni, S. A. Stewart, “Flap endonuclease 1 contributes to telomere stability.” Curr Biol 18, 496-500 (2008). PubMed
X. Jiang, N. Nariai, M. Steffen, S. Kasif, E. D. Kolaczyk, “Integration of relational and hierarchical network information for protein function prediction.” BMC Bioinformatics 9, 350 (2008). PubMed
V. L. Herrera, J. L. Decano, P. Bagamasbad, T. Kufahl, M. Steffen, N. Ruiz-Opazo, “Sex-specific hippocampus-dependent cognitive deficits and increased neuronal autophagy in DEspR haploinsufficiency in mice.” Physiol Genomics 35, 316-29 (2008). PubMed
D. M. Ratner, J. Cui, M. Steffen, L. L. Moore, P. W. Robbins, J. Samuelson, “Changes in the N-glycome, glycoproteins with Asn-linked glycans, of Giardia lamblia with differentiation from trophozoites to cysts.” Eukaryot Cell 7, 1930-40 (2008). PubMed
K. L. Van Dellen, A. Chatterjee, D. M. Ratner, P. E. Magnelli, J. F. Cipollo, M. Steffen, P. W. Robbins, J. Samuelson, “Unique posttranslational modifications of chitin-binding lectins of Entamoeba invadens cyst walls.” Eukaryot Cell 5, 836-48 (2006). PubMed
R. Ahmad, D. H. Nguyen, M. A. Wingerd, G. M. Church, M. A. Steffen, “Molecular Weight Assessment of Proteins in Total Proteome Profiles Using 1D-PAGE and LC/MS/MS.” Proteome Sci 3, 6 (2005). PubMed