研究领域

1．植物细胞分子遗传学 2．植物基因组与分子进化遗传学 3. 植物基因组学与蛋白质组学

近期论文

1.Songtao Gui, Jing Peng, Xiaolei Wang, Zhihua Wu, Rui Cao, Jér?me Salse, Hongyuan Zhang, Zhixuan Zhu, Qiuju Xia, Zhiwu Quan, Liping Shu, Wedong Ke and Yi Ding1*.Improving Nelumbo nucifera genome assemblies using high-resolution genetic maps and BioNano genome mapping reveals ancient chromosome rearrangements. The plant journal 2018, TPJ-00125-2018 DOI:10.1111/tpj.13894 2.Yinzhen Zheng, Junjie Yan, Shuzhen Wang, Meiling Xu, Keke Huang, Guanglong Chen and Yi Ding*. Genome-wide identification of the pectate lyase-like (PLL) gene family and functional analysis of two PLL genes in rice. Molecular Genetics and Genomics 2018, 293(6):1317-1331DOI：10.1007/s00438-018-1466-x 3.Guanglong Chen, Yu Zou, Jihong Hu* and Yi Ding*.Genome-wide analysis of the rice PPR gene family and their expression profiles under different stress treatments.BMC Genomics 2018,19:720 https://doi.org/10.1186/s12864-018-5088-9 4.Jihong Hu, Tao Zeng, Qiongmei Xia, Qian Qian, Congdang Yang, Yi Ding*, Luonan Chen*, Wen Wang*.Unravelling miRNA regulation in yield of rice (Oryza sativa) based on differential network model. Scientific reports 2018, 8:8498 5.Zhixuan Zhu, Songtao Gui, Jing Jin, Rong Yi, Zhihua Wu, Qian Qian and Yi Ding*. The NnCenH3 protein and centromeric DNA sequences profile of sacred lotus (Nelumbo nucifera Gaertn.) reveal the DNA structures and dynamics of centromeres in basal eudicots. The plant journal 2016, doi: 10.1111/tpj.13219 6.Yubo Zhang and Yi Ding*. Dynamics Simulation and Bioinformatics Study on chloroplast stromal ridge complex from rice ( Oryza sativa L.).BMC Bioinformatics 2016, 17:28| DOI 10.1186/s12859-016-0877-0 7.Songtao Gui, Zhihua Wu, Hongyuan Zhang, Yinzhen Zheng, Zhixuan Zhu, Dequan Liang and Yi Ding*. The mitochondrial genome map of Nelumbo nucifera reveals ancient evolutionary features. Scientific reports 2016, 6:30158 | DOI: 10.1038/srep30158 8.Hongyuan Zhang, Jihong Hu, Qian Qian, Hao Chen, Jing Jin, and Yi Ding*. Small RNA profiles of the rice PTGMS line Wuxiang S reveal miRNAs involved in the fertility transition. Frontiers in Plant Science 2016, 7: 514 | DOI: 10.3389/fpls.2016.00514 9.Jihong Hu, Guanglong Chen, Hongyuan Zhang, Qian Qian, and Yi Ding*. Comparative transcript profiling of alloplasmic male-sterile lines revealed altered gene expression related to pollen development in rice (Oryza sativa L.). BMC Plant Biology 2016, 16:175 | DOI 10.1186/s12870-016-0864-7 10.Jihong Hu, Jing Jin, Qian Qian, Keke Huang and Yi Ding*. Small RNA and degradome profiling reveals miRNA regulation in the seed germination of ancient eudicot Nelumbo nucifera. BMC Genomics 2016, 17 (1):684| DOI:10.1186/s12864-016-3032-4 11.Junjie Yan, Hongyuan Zhang, Yinzheng Zheng,and Yi Ding*. Comparative expression profiling of miRNAs between the cytoplasmic male sterile line MeixiangA and its maintainer line MeixiangB during rice anther development. Planta 2015, 241:109-123 | DOI: 10.1007/s00425-014-2167-2 12.Jihong Hu, Xiaojun Chen, Hongyuan Zhang, and Yi Ding*. Genome-wide analysis of DNA methylation in photoperiod- and thermo-sensitive male sterile rice Peiai 64S. BMC Genomics 2015,16:102 |DOI 10.1186/s12864-015-1317-7 13.Jihong Hu, Songtao Gui, Zhixuan Zhu, Xiaolei Wang, Weidong Ke, and Yi Ding*. Genome-wide identification of SSR and SNP markers based on whole-genome re-sequencing of a Thailand wild sacred lotus (Nelumbo nucifera). PLoS ONE 2015，10(11): e0143765| DOI:10.1371/journal.pone.0143765 14.Qian Qian, Lin Huang, Rong Yi, Shuzhen Wang, Yi Ding*. Enhanced resistance to blast fungus in rice (Oryza sativa L.) by expressing the ribosome-inactivating protein alpha- momorcharin. Plant Science 2014，217-218: 1-7 15.Xiaojun Chen, Jihong Hu, Hongyuan Zhang, and Yi Ding*. DNA methylation changes in photoperiod - thermo-sensitive male sterile rice PA64S under the two different conditions. Gene 2014, 537(1):143-148 16.Jihong Hu, Lulu Sun, Zhixuan Zhu, Yuan Zheng, Wei Xiong, and Yi Ding*. Characterization of conserved microRNAs from five different cucurbit species using computational and experimental analysis. Biochimie 2014,102:137-144 17.Zhihua Wu, Songtao Gui, Shuzhen Wang, and Yi Ding*. Molecular evolution and functional characterisation of an ancient phenylalanine ammonia-lyase gene (NnPAL1) from Nelumbo nucifera: novel insight into the evolution of the PAL family in angiosperms. BMC Evolutionary Biology2014, 14:100 18.Junjie Yan, Han Tian, Shuzhen Wang, Jinzhen Shao, Yinzhen Zheng, Hongyuan Zhang, Lin Guo, and Yi Ding*. Proteomics analysis identified pollen developmental defects in the rice ZD-CMS line. Journal of Proteomics 2014,108:110-123 19.Rong Yi, Zhixuan Zhu, Jihong Hu, Qian Qian, Jincheng Dai and Yi Ding*. Identification and expression analysis of microRNAs at the grain filling stage in rice（Oryza sativa L.）via deep sequencing.PLOS ONE 2013, 8(3): e57863